A. 致謝形式 Acknowledging the Core

請於成果發表時載明本設施與所使用儀器機型於文章材料方法與致謝,以提升本設施使用效益。致謝格式範例「The authors acknowledge the technical support provided by IPMB flow cytometry analysis and sorting service, Academia Sinica」。歡迎將論文發表成果PDF bluegill@gate.sinica.edu.tw 信箱,以協助本設施更新期刊發表。

The core facility mainly provides flow cytometric sorting and counseling services. Please refer to our facility and cytometer model in the methods and acknowledgements sections of your publication. Acknowledgement exampleThe authors acknowledge the technical support provided by IPMB flow cytometry analysis and sorting service, Academia Sinica」. Please email the publication paper PDF to bluegill@gate.sinica.edu.twassisting the facility to update the journal published results.



B. 期刊發表 Publication

2022

Lin CS, Hsu CT, Yuan YH, Zheng PX, Wu FH, Cheng QW, Wu YL, Wu TL, Lin S, Yue JJ, Cheng YH, Lin SI, Shih MC, Sheen J, Lin YC. (2022). DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration. Plant Physiology. "Plant genome size" 

 


Lee TJ, Liu Y, Liu WA., Lin YF, Lee HH, Ke HM, ... & Tsai IJ. (2022). Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages. Genome Research, gr-276286.


Wu HW, Fajiculay E, Wu JF, Yan CCS, Hsu CP, Wu SH. (2022). Noise reduction by upstream open reading frames. Nature Plants, 1-7. "Plant protein expression" 

 


Chang, F. H., Yang, J. W., Liu, A. C. H., Lu, H. P., Gong, G. C., Shiah, F. K., & Hsieh, C. H. (2022). Niche-based deterministic assembly processes strengthen the effects of β-diversity on metacommunity functioning of marine bacterioplankton. bioRxiv. "Plankton & virus analysis" 

 


2021

Ho PC, Gong GC, Hsieh CH, Chen PWY, Tsai AY. (2021). Diel Variation of Viral Production in a Coastal Subtropical Marine System. Diversity, 13(9), 426. "Bacteria & virus analysis" 

 


Chen YH, Chen HJ, Yang CY, Shiu JH, Hoh DZ, Chiang PW, ... & Tang SL. (2021). Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral‐killing sponge, Terpios hoshinota. Environmental Microbiology. "Cyanobactria sorting" 

 


Hsu PJ, Tan MC, Shen HL, Chen YH, WangYY, Hwang SG, Chiang MH, Le QV, Kuo WS, Chou YC, Lin SY, Jauh GY, Cheng WH. (2021). The Nucleolar Protein SAHY1 is Involved in Pre-rRNA Processing and Normal Plant Growth." Plant Physiology. "Plant genome size analysis" 

 


Panibe, J. P., Wang, L., Li, J., Li, M. Y., Lee, Y. C., Wang, C. S., ... & Li, W. H. (2021). Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green Revolution. Genomics.  "Plant genome size analysis" 

 


Tsai, Y. T., Chen, P. Y., & To, K. Y. (2021). Induction of Polyploidy and Metabolic Profiling in the Medicinal Herb Wedelia chinensis. Plants, 10(6), 1232.  "Plant genome size analysis" 


Wu, Y. T., Chiang, P. W., Tandon, K., Rogozin, D. Y., Degermendzhy, A. G., & Tang, S. L. (2021). Single-cell genomics-based analysis reveals a vital ecological role of Thiocapsa sp. LSW in the meromictic Lake Shunet, Siberia. Microbial Genomics, 7(12), 000712.


2020

 

Anandharaj M, Lin YJ, Rani RP, Nadendla EK, Ho MC, Huang CC, Cheng JF, Chang JJ, Li WH. (2020). Constructing a yeast to express the largest cellulosome complex on the cell surface. Proceedings of the National Academy of Sciences117(5) 2385-2394.  "Yeast GFP signal analysis"


Lee YI, Tseng YF, Lee YC, Chung MC. (2020). Chromosome constitution and nuclear DNA content of Phalaenopsishybrids. "Plant genome size analysis" Scientia Horticulturae, 262 (2020) 109089. "Plant genome size analysis" 


Yu, SP & Chan, BKK (2020). Effects of polystyrene microplastics on larval development, settlement, and metamorphosis of the intertidal barnacle Amphibalanus amphitrite. Ecotoxicology and Environmental Safety, 194, 110362. "Microplastic particles uptake experiment"

 


2019

Chaw SM*, Liu YC, Wu YW, Wang HY, Lin CYI, Wu CS, Ke HM, Chang LY, Hsu CY, Yang HT, Sudianto E, HsuMH, Wu KP, Wang LN, Leebens-Mack JH & Tsai IJ*. (2019). Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. Nature plants, 5(1), 63. "Plant genome size analysis"


Shih MD, Lin JS, Fang MJ, Tsai YC, & Hsing YIC. (2019). Dye-and fluorescence-based assay to characterize symplastic and apoplastic trafficking in soybean (Glycime max L.) endosperm. Botanical studies, 60(1), 24. "Plant genome size analysis"

 


2018

Chao YT, Chen WC, Chen CY, Ho HY, Yeh CH, Kuo YT, Su CL, Yen SH, Hsueh HY, Yeh JH, Hsu HL, Tsai YH, Kuo TY, Chang SB, Chen KY, Shih MC*. (2018). Chromosome‐level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding. Plant biotechnology journal16(12), 2027-2041. "Plant genome size analysis"


Chang P, Tseng YF, Chen PY, Wang CJ. (2018) Using flow cytometry to isolate maize meiocytes for next generation sequencing: A time and labor efficient method. Current Protocols in Plant Biology, 3(2), e20068. "Maize meiocytes sorting"


Changa LY, Lib, KT, Yangb WJ, Chung MC, Changd JC, Change, MW.(2018). Ploidy level and their relationship with vegetative traits of mulberry (Morus spp.) species in Taiwan. Scientia Horticulturae, 235, 78-85. "Plant ploidy analysis"


Lee, IM, Yang, FL, Chen, TL, Liao, KS, Ren, CT, Lin, NT, & Wu, SH. (2018). Pseudaminic acid on exopolysaccharide of Acinetobacter baumannii plays a critical role in phage-assisted preparation of glycoconjugate vaccine with high antigenicity. Journal of the American Chemical Society, 140(28), 8639-8643. "Bacterial GFP & antibody analysis"

 


2017

Cheng, N., Lo, Y. S., Ansari, M. I., Ho, K. C., Jeng, S. T., Lin, N. S., & Dai, H. (2017). Correlation between mtDNA complexity and mtDNA replication mode in developing cotyledon mitochondria during mung bean seed germination. New Phytologist, 213 (2), 751-763. "Plant mitochondria DNA content analysis"


Lee, Y. I., Chung, M. C., Kuo, H. C., Wang, C. N., Lee, Y. C., Lin, C. Y., ... & Yeh, C. H. (2017). The evolution of genome size and distinct distribution patterns of rDNA in Phalaenopsis (Orchidaceae). Botanical Journal of the Linnean Society, 185(1), 65-80. "Plant ploidy analysis"

 


2016

De, K., Villegas, P. B., Mitra, S., Yang, X., Homan, G., Jauh, G. Y., & Makaroff, C. A. (2016). The opposing actions of Arabidopsis CTF7 and WAPL1/2: differences in mitotic and meiotic cells. The plant cell, TPC2015-00781. "Plant ploidy analysis"


Liu, M. S., Kuo, T. C. Y., Ko, C. Y., Wu, D. C., Li, K. Y., Lin, W. J., Lin, C. P., Wang, Y. W., Schafleitner, R., Lo, H. F., Chen, C. Y., & Chen, L., F. (2016). Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek). BMC plant biology, 16 (1), 46. "Plant genome size analysis" 

 


2015

Chen, H., Chung, M. C., Tsai, Y. C., Wei, F. J., Hsieh, J. S., & Hsing, Y. I. C. (2015). Distribution of new satellites and simple sequence repeats in annual and perennial Glycine species. Botanical studies, 56(1), 22. "Plant genome size analysis"


Chiang, M. H., Shen, H. L., & Cheng, W. H. (2015). Genetic analyses of the interaction between abscisic acid and gibberellins in the control of leaf development in Arabidopsis thalianaPlant Science, 236, 260-271. "Plant ploidy Analysis"


Yeh, H. Y., Lin, C. S., & Chang, S. B. (2015). Cytogenetic and cytometric analyses in artificial intercytotypic hybrids of the emergent orchid model species Erycina pusillaEuphytica, 206(2), 533-539. "Plant ploidy Analysis"


2014

Chen, W. J., Hsieh, F. C., Hsu, F. C., Tasy, Y. F., Liu, J. R., & Shih, M. C. (2014). Characterization of an insecticidal toxin and pathogenicity of Pseudomonas taiwanensis against insects. PLoS pathogens, 10(8), e1004288.  "GFP-positive bacteria analysis"


Ma, L. S., Hachani, A., Lin, J. S., Filloux, A., & Lai, E. M. (2014). Agrobacterium tumefaciens deploys a superfamily of type VI secretion DNase effectors as weapons for interbacterial competition in planta. Cell host & microbe, 16(1), 94-104. "GFP-positive cells analysis and sorting"


Wu, Y. T., Chiang, P. W., Tandon, K., Rogozin, D. Y., Degermendzhy, A. G., & Tang, S. L. (2021). Single-cell genomics-based analysis reveals a vital ecological role of Thiocapsa sp. LSW in the meromictic Lake Shunet, Siberia. Microbial Genomics, 7(12), 000712. "Bacteria sorting"

 


Tseng YF, Lin J, Dai M, & Kao SJ (2014). Joint effect of freshwater plume and coastal upwelling on phytoplankton growth off the Changjiang River. Biogeosciences, 11(2), 409-423.


2013

Bolaños‐Villegas, P., Yang, X., Wang, H. J., Juan, C. T., Chuang, M. H., Makaroff, C. A., & Jauh, G. Y. (2013). Arabidopsis CHROMOSOME TRANSMISSION FIDELITY 7 (AtCTF7/ECO1) is required for DNA repair, mitosis and meiosis. The Plant Journal, 75(6), 927-940. "Plant ploidy analysis"


Lan, P., Li, W., Lin, W. D., Santi, S., & Schmidt, W. (2013). Mapping gene activity of Arabidopsis root hairs. Genome biology, 14(6), R67. "GFP-positive protoplasts sorting"

 


2011

Lo, Y. S., Cheng, N., Hsiao, L. J., Annamalai, A., Jauh, G. Y., Wen, T. N., Dai, H., & Chiang, K. S. (2011). Actin in mung bean mitochondria and implications for its function. The Plant Cell, 23(10), 3727-3744. "Plant GFP-positive mitochondria analysis & sorting"


Tsai, M. Y., Chen, S. H., & Kao, W. Y. (2010). Floral morphs, pollen viability, and ploidy level of Oxalis corymbosa DC. in Taiwan. Botanical Studies, 51(1). "Plant  ploidy level analysis"